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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for Rhbg (ENSMSIG00000001861) (Steppe mouse) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species 1714 homologs (oldest homol.)
Chordata Chordata ~550 Mya 344 species 1708 homologs
Vertebrata Vertebrata ~550 Mya 340 species 1696 homologs (dupl. node)
1360 homologs (dupl. node)
1008 homologs (dupl. node)
793 homologs (dupl. node)
344 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 341 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 239 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 237 homologs
Amniota Amniota ~326 Mya 236 species 235 homologs
Mammalia Mammalia ~184 Mya 168 species 171 homologs
Theria Theria ~166 Mya 166 species 169 homologs
Eutheria Eutheria ~102 Mya 158 species 161 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 153 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 110 homologs
Glires Glires ~81 Mya 57 species 63 homologs
Rodentia Rodentia ~80 Mya 53 species 60 homologs
Sciurognathi Sciurognathi ~79 Mya 39 species 46 homologs
Myomorpha Myomorpha ~51 Mya 28 species 35 homologs
Muroidea Muroidea ~44 Mya 26 species 34 homologs
Muridae Muridae ~29 Mya 24 species 32 homologs
Murinae Murinae ~20 Mya 11 species 19 homologs
Mus Mus ~7 Mya 9 species 17 homologs (dupl. node)
9 homologs
Mus_A Mus_A ~6 Mya 7 species 7 homologs
Mus_B Mus_B ~2 Mya 5 species 5 homologs
Mus_C Mus_C ~2 Mya 3 species 3 homologs
Steppe mouse Steppe mouse ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'