A more recent version of genomicus is available here

 
Genomicus v96.01 Title
Genomicus v96.01 Logo


DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

email logo Contact us.



IBENS Logo ENS Logo CNRS Logo ANCESTROME Logo



Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for DNAH5 (ENSODEG00000015643) (Degu) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species 447 homologs (oldest homol.)
Chordata Chordata ~550 Mya 344 species 444 homologs
Vertebrata Vertebrata ~550 Mya 340 species 435 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 429 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 288 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 286 homologs
Amniota Amniota ~326 Mya 236 species 284 homologs
Mammalia Mammalia ~184 Mya 168 species 173 homologs
Theria Theria ~166 Mya 166 species 171 homologs
Eutheria Eutheria ~102 Mya 158 species 163 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 155 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 108 homologs
Glires Glires ~81 Mya 57 species 59 homologs
Rodentia Rodentia ~80 Mya 53 species 55 homologs
Hystricomorpha Hystricomorpha ~42 Mya 13 species 13 homologs
Hystricomorpha_a Hystricomorpha_a ~35 Mya 7 species 7 homologs
Hystricomorpha_b Hystricomorpha_b ~32 Mya 3 species 3 homologs
Degu Degu ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'