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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for pa2g4a (ENSCVAG00000001268) (Sheepshead minnow) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species
Chordata Chordata ~550 Mya 344 species
Vertebrata Vertebrata ~550 Mya 340 species
Euteleostomi Euteleostomi ~420 Mya 336 species 538 homologs (oldest homol.)
Neopterygii Neopterygii ~314 Mya 95 species 100 homologs
Osteoglossocephalai Osteoglossocephalai ~267 Mya 93 species 98 homologs
Clupeocephala Clupeocephala ~229 Mya 89 species 92 homologs
Euteleosteomorpha Euteleosteomorpha ~206 Mya 81 species 82 homologs
Acanthomorphata Acanthomorphata ~148 Mya 79 species 80 homologs
Percomorphaceae Percomorphaceae ~128 Mya 77 species 79 homologs
Percomorphaceae_A Percomorphaceae_A ~128 Mya 75 species 77 homologs
Percomorphaceae_B Percomorphaceae_B ~128 Mya 73 species 73 homologs
NAME_3 NAME_3 ~128 Mya 63 species 64 homologs
Ovalentaria Ovalentaria ~111 Mya 49 species 50 homologs
Atherinomorphae Atherinomorphae ~93 Mya 27 species 29 homologs
Cyprinodontiformes Cyprinodontiformes ~74 Mya 19 species 21 homologs
Cyprinodontoidei Cyprinodontoidei ~57 Mya 17 species 19 homologs
NAME_4 NAME_4 ~57 Mya 3 species 3 homologs
Sheepshead minnow Sheepshead minnow ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'