Root species for pa2g4a (ENSCVAG00000001268) (Sheepshead minnow) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 350 species | |
Bilateria | ~580 Mya | 348 species | |
Chordata | ~550 Mya | 344 species | |
Vertebrata | ~550 Mya | 340 species | |
Euteleostomi | ~420 Mya | 336 species | 538 homologs (oldest homol.) |
Neopterygii | ~314 Mya | 95 species | 100 homologs |
Osteoglossocephalai | ~267 Mya | 93 species | 98 homologs |
Clupeocephala | ~229 Mya | 89 species | 92 homologs |
Euteleosteomorpha | ~206 Mya | 81 species | 82 homologs |
Acanthomorphata | ~148 Mya | 79 species | 80 homologs |
Percomorphaceae | ~128 Mya | 77 species | 79 homologs |
Percomorphaceae_A | ~128 Mya | 75 species | 77 homologs |
Percomorphaceae_B | ~128 Mya | 73 species | 73 homologs |
NAME_3 | ~128 Mya | 63 species | 64 homologs |
Ovalentaria | ~111 Mya | 49 species | 50 homologs |
Atherinomorphae | ~93 Mya | 27 species | 29 homologs |
Cyprinodontiformes | ~74 Mya | 19 species | 21 homologs |
Cyprinodontoidei | ~57 Mya | 17 species | 19 homologs |
NAME_4 | ~57 Mya | 3 species | 3 homologs |
Sheepshead minnow | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'