Genomicus v96.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for PA2G4 (ENSCJAG00000011811) (Marmoset)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	350 species
Bilateria	~580 Mya	348 species
Chordata	~550 Mya	344 species
Vertebrata	~550 Mya	340 species
Euteleostomi	~420 Mya	336 species	534 homologs (oldest homol.)
Sarcopterygii	~400 Mya	240 species	433 homologs
Tetrapoda	~359 Mya	238 species	431 homologs
Amniota	~326 Mya	236 species	429 homologs
Mammalia	~184 Mya	168 species	368 homologs
Theria	~166 Mya	166 species	367 homologs
Eutheria	~102 Mya	158 species	359 homologs
Boreoeutheria	~95 Mya	149 species	350 homologs
Euarchontoglires	~90 Mya	104 species	291 homologs
Primates	~83 Mya	45 species	197 homologs
Haplorrhini	~57 Mya	38 species	190 homologs
Simiiformes	~45 Mya	36 species	186 homologs (dupl. node) 178 homologs (dupl. node) 155 homologs (dupl. node) 65 homologs
Platyrrhini	~19 Mya	6 species	8 homologs (dupl. node) 6 homologs
Cebidae	~19 Mya	4 species	4 homologs
Marmoset	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here