A more recent version of genomicus is available here

 
Genomicus v96.01 Title
Genomicus v96.01 Logo


DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

email logo Contact us.



IBENS Logo ENS Logo CNRS Logo ANCESTROME Logo



Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for Wac (ENSMUSG00000024283) (Mouse) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species 537 homologs (oldest homol.)
Chordata Chordata ~550 Mya 344 species 531 homologs
Vertebrata Vertebrata ~550 Mya 340 species 527 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 519 homologs (dupl. node)
513 homologs (dupl. node)
402 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 297 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 295 homologs
Amniota Amniota ~326 Mya 236 species 293 homologs
Mammalia Mammalia ~184 Mya 168 species 223 homologs
Theria Theria ~166 Mya 166 species 221 homologs
Eutheria Eutheria ~102 Mya 158 species 213 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 204 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 137 homologs
Glires Glires ~81 Mya 57 species 90 homologs
Rodentia Rodentia ~80 Mya 53 species 82 homologs
Sciurognathi Sciurognathi ~79 Mya 39 species 47 homologs
Myomorpha Myomorpha ~51 Mya 28 species 34 homologs
Muroidea Muroidea ~44 Mya 26 species 30 homologs
Muridae Muridae ~29 Mya 24 species 28 homologs
Murinae Murinae ~20 Mya 11 species 11 homologs
Mus Mus ~7 Mya 9 species 9 homologs
Mus_A Mus_A ~6 Mya 7 species 7 homologs
Mus_B Mus_B ~2 Mya 5 species 5 homologs
Mouse Mouse ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'