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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for DAPL1 (ENSHGLG00000009016) (Naked mole-rat female) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species 611 homologs (oldest homol.)
Chordata Chordata ~550 Mya 344 species 605 homologs (dupl. node)
311 homologs
Vertebrata Vertebrata ~550 Mya 340 species 307 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 306 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 213 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 212 homologs
Amniota Amniota ~326 Mya 236 species 210 homologs
Mammalia Mammalia ~184 Mya 168 species 153 homologs
Theria Theria ~166 Mya 166 species 151 homologs
Eutheria Eutheria ~102 Mya 158 species 143 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 134 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 91 homologs
Glires Glires ~81 Mya 57 species 62 homologs
Rodentia Rodentia ~80 Mya 53 species 58 homologs
Hystricomorpha Hystricomorpha ~42 Mya 13 species 12 homologs
Bathyergidae Bathyergidae ~33 Mya 5 species 5 homologs
Heterocephalus glaber Heterocephalus glaber ~0 Mya 3 species 3 homologs
Naked mole-rat female Naked mole-rat female ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'