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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for Hsp70Bc (FBgn0013279) (Fruitfly) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species 595 homologs (oldest homol.)
Bilateria Bilateria ~580 Mya 348 species 591 homologs
Ecdysozoa Ecdysozoa ~580 Mya 3 species 14 homologs
Fruitfly Fruitfly ~0 Mya 1 species 12 homologs (dupl. node)
9 homologs (dupl. node)
8 homologs (dupl. node)
7 homologs (dupl. node)
4 homologs (dupl. node)
3 homologs (dupl. node)
2 homologs (dupl. node)
1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'