Root species for Hsp70Bc (FBgn0013279) (Fruitfly) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 350 species | 595 homologs (oldest homol.) |
Bilateria | ~580 Mya | 348 species | 591 homologs |
Ecdysozoa | ~580 Mya | 3 species | 14 homologs |
Fruitfly | ~0 Mya | 1 species | 12 homologs (dupl. node) 9 homologs (dupl. node) 8 homologs (dupl. node) 7 homologs (dupl. node) 4 homologs (dupl. node) 3 homologs (dupl. node) 2 homologs (dupl. node) 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'