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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for Nog (ENSNGAG00000008406) (Upper Galilee mountains blind mole rat) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species
Chordata Chordata ~550 Mya 344 species 700 homologs (oldest homol.)
Vertebrata Vertebrata ~550 Mya 340 species 696 homologs (dupl. node)
563 homologs (dupl. node)
403 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 400 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 217 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 215 homologs
Amniota Amniota ~326 Mya 236 species 213 homologs
Mammalia Mammalia ~184 Mya 168 species 147 homologs
Theria Theria ~166 Mya 166 species 146 homologs
Eutheria Eutheria ~102 Mya 158 species 139 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 132 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 94 homologs
Glires Glires ~81 Mya 57 species 49 homologs
Rodentia Rodentia ~80 Mya 53 species 48 homologs
Sciurognathi Sciurognathi ~79 Mya 39 species 37 homologs
Myomorpha Myomorpha ~51 Mya 28 species 27 homologs
Muroidea Muroidea ~44 Mya 26 species 25 homologs
Upper Galilee mountains blind mole rat Upper Galilee mountains blind mole rat ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'