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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for Racgap1 (MGP_PahariEiJ_G0020275) (Shrew mouse) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species 615 homologs (oldest homol.)
Chordata Chordata ~550 Mya 344 species 605 homologs
Vertebrata Vertebrata ~550 Mya 340 species 599 homologs (dupl. node)
588 homologs (dupl. node)
430 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 429 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 254 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 252 homologs
Amniota Amniota ~326 Mya 236 species 250 homologs
Mammalia Mammalia ~184 Mya 168 species 183 homologs
Theria Theria ~166 Mya 166 species 181 homologs
Eutheria Eutheria ~102 Mya 158 species 173 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 164 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 119 homologs
Glires Glires ~81 Mya 57 species 64 homologs
Rodentia Rodentia ~80 Mya 53 species 60 homologs
Sciurognathi Sciurognathi ~79 Mya 39 species 46 homologs
Myomorpha Myomorpha ~51 Mya 28 species 28 homologs
Muroidea Muroidea ~44 Mya 26 species 26 homologs
Muridae Muridae ~29 Mya 24 species 24 homologs
Murinae Murinae ~20 Mya 11 species 11 homologs
Mus Mus ~7 Mya 9 species 9 homologs
Shrew mouse Shrew mouse ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'