Genomicus v96.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for RACGAP1 (ENSPTRG00000004921) (Chimpanzee)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	350 species
Bilateria	~580 Mya	348 species	614 homologs (oldest homol.)
Chordata	~550 Mya	344 species	604 homologs
Vertebrata	~550 Mya	340 species	598 homologs (dupl. node) 587 homologs (dupl. node) 429 homologs
Euteleostomi	~420 Mya	336 species	428 homologs
Sarcopterygii	~400 Mya	240 species	253 homologs
Tetrapoda	~359 Mya	238 species	251 homologs
Amniota	~326 Mya	236 species	249 homologs
Mammalia	~184 Mya	168 species	182 homologs
Theria	~166 Mya	166 species	180 homologs
Eutheria	~102 Mya	158 species	172 homologs
Boreoeutheria	~95 Mya	149 species	163 homologs
Euarchontoglires	~90 Mya	104 species	118 homologs
Primates	~83 Mya	45 species	52 homologs
Haplorrhini	~57 Mya	38 species	45 homologs
Simiiformes	~45 Mya	36 species	43 homologs
Catarrhini	~30 Mya	29 species	34 homologs
Hominoidea	~25 Mya	11 species	14 homologs
Hominidae	~16 Mya	9 species	12 homologs
Homo/Pan/Gorilla group	~9 Mya	7 species	10 homologs
Homo/Pan group	~5 Mya	5 species	8 homologs
Pan	~3 Mya	3 species	6 homologs
Chimpanzee	~0 Mya	1 species	2 homologs (dupl. node) 1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here