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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for DSEL (ENSMMUG00000042864) (Rhesus) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species
Bilateria Bilateria ~580 Mya 348 species
Chordata Chordata ~550 Mya 344 species 705 homologs (oldest homol.)
Vertebrata Vertebrata ~550 Mya 340 species 701 homologs (dupl. node)
342 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 334 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 217 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 215 homologs
Amniota Amniota ~326 Mya 236 species 213 homologs
Mammalia Mammalia ~184 Mya 168 species 147 homologs
Theria Theria ~166 Mya 166 species 145 homologs
Eutheria Eutheria ~102 Mya 158 species 138 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 131 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 93 homologs
Primates Primates ~83 Mya 45 species 39 homologs
Haplorrhini Haplorrhini ~57 Mya 38 species 34 homologs
Simiiformes Simiiformes ~45 Mya 36 species 32 homologs
Catarrhini Catarrhini ~30 Mya 29 species 25 homologs
Cercopithecidae Cercopithecidae ~19 Mya 17 species 14 homologs
Cercopithecinae Cercopithecinae ~13 Mya 10 species 10 homologs
Macaca Macaca ~5 Mya 4 species 4 homologs
Rhesus Rhesus ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'