Root species for INAVA (ENSPPAG00000029036) (pygmy chimpanzee) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 350 species | |
Bilateria | ~580 Mya | 348 species | |
Chordata | ~550 Mya | 344 species | |
Vertebrata | ~550 Mya | 340 species | 752 homologs (oldest homol.) |
Euteleostomi | ~420 Mya | 336 species | 748 homologs (dupl. node) 399 homologs |
Sarcopterygii | ~400 Mya | 240 species | 211 homologs |
Tetrapoda | ~359 Mya | 238 species | 209 homologs |
Amniota | ~326 Mya | 236 species | 208 homologs |
Mammalia | ~184 Mya | 168 species | 158 homologs |
Theria | ~166 Mya | 166 species | 156 homologs |
Eutheria | ~102 Mya | 158 species | 149 homologs |
Boreoeutheria | ~95 Mya | 149 species | 141 homologs |
Euarchontoglires | ~90 Mya | 104 species | 103 homologs |
Primates | ~83 Mya | 45 species | 44 homologs |
Haplorrhini | ~57 Mya | 38 species | 37 homologs |
Simiiformes | ~45 Mya | 36 species | 35 homologs |
Catarrhini | ~30 Mya | 29 species | 28 homologs |
Hominoidea | ~25 Mya | 11 species | 11 homologs |
Hominidae | ~16 Mya | 9 species | 9 homologs |
Homo/Pan/Gorilla group | ~9 Mya | 7 species | 7 homologs |
Homo/Pan group | ~5 Mya | 5 species | 5 homologs |
Pan | ~3 Mya | 3 species | 3 homologs |
pygmy chimpanzee | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'