Root species for PIAS2 (ENSVPAG00000012376) (Alpaca) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 350 species | 2350 homologs (oldest homol.) |
Bilateria | ~580 Mya | 348 species | 2346 homologs (dupl. node) 2325 homologs (dupl. node) 1475 homologs |
Chordata | ~550 Mya | 344 species | 1471 homologs |
Vertebrata | ~550 Mya | 340 species | 1467 homologs (dupl. node) 1117 homologs (dupl. node) 414 homologs |
Euteleostomi | ~420 Mya | 336 species | 413 homologs |
Sarcopterygii | ~400 Mya | 240 species | 314 homologs |
Tetrapoda | ~359 Mya | 238 species | 312 homologs |
Amniota | ~326 Mya | 236 species | 310 homologs (dupl. node) 288 homologs |
Mammalia | ~184 Mya | 168 species | 209 homologs |
Theria | ~166 Mya | 166 species | 207 homologs |
Eutheria | ~102 Mya | 158 species | 197 homologs |
Boreoeutheria | ~95 Mya | 149 species | 186 homologs |
Laurasiatheria | ~88 Mya | 44 species | 48 homologs |
Cetartiodactyla | ~61 Mya | 13 species | 15 homologs |
Alpaca | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'