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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for PIAS2 (ENSVPAG00000012376) (Alpaca) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species 2350 homologs (oldest homol.)
Bilateria Bilateria ~580 Mya 348 species 2346 homologs (dupl. node)
2325 homologs (dupl. node)
1475 homologs
Chordata Chordata ~550 Mya 344 species 1471 homologs
Vertebrata Vertebrata ~550 Mya 340 species 1467 homologs (dupl. node)
1117 homologs (dupl. node)
414 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 413 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 314 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 312 homologs
Amniota Amniota ~326 Mya 236 species 310 homologs (dupl. node)
288 homologs
Mammalia Mammalia ~184 Mya 168 species 209 homologs
Theria Theria ~166 Mya 166 species 207 homologs
Eutheria Eutheria ~102 Mya 158 species 197 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 186 homologs
Laurasiatheria Laurasiatheria ~88 Mya 44 species 48 homologs
Cetartiodactyla Cetartiodactyla ~61 Mya 13 species 15 homologs
Alpaca Alpaca ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'