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Genomicus v96.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 96.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for TPT1 (ENSSBOG00000031728) (Bolivian squirrel monkey) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 350 species 1099 homologs (oldest homol.)
Bilateria Bilateria ~580 Mya 348 species 1097 homologs
Chordata Chordata ~550 Mya 344 species 1093 homologs
Vertebrata Vertebrata ~550 Mya 340 species 1089 homologs
Euteleostomi Euteleostomi ~420 Mya 336 species 1085 homologs
Sarcopterygii Sarcopterygii ~400 Mya 240 species 981 homologs
Tetrapoda Tetrapoda ~359 Mya 238 species 979 homologs
Amniota Amniota ~326 Mya 236 species 977 homologs
Mammalia Mammalia ~184 Mya 168 species 898 homologs
Theria Theria ~166 Mya 166 species 896 homologs
Eutheria Eutheria ~102 Mya 158 species 869 homologs (dupl. node)
859 homologs (dupl. node)
609 homologs (dupl. node)
408 homologs (dupl. node)
332 homologs (dupl. node)
189 homologs
Boreoeutheria Boreoeutheria ~95 Mya 149 species 185 homologs (dupl. node)
95 homologs
Euarchontoglires Euarchontoglires ~90 Mya 104 species 75 homologs (dupl. node)
51 homologs
Primates Primates ~83 Mya 45 species 37 homologs
Haplorrhini Haplorrhini ~57 Mya 38 species 31 homologs
Simiiformes Simiiformes ~45 Mya 36 species 30 homologs
Platyrrhini Platyrrhini ~19 Mya 6 species 6 homologs
Cebidae Cebidae ~19 Mya 4 species 4 homologs
Bolivian squirrel monkey Bolivian squirrel monkey ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'