Genomicus v95.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for DAPK1 (ENSUMAG00000007670) (Polar bear)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	279 species
Bilateria	~580 Mya	277 species
Chordata	~550 Mya	273 species	793 homologs (oldest homol.)
Vertebrata	~550 Mya	269 species	789 homologs (dupl. node) 308 homologs
Euteleostomi	~420 Mya	265 species	300 homologs
Sarcopterygii	~400 Mya	169 species	189 homologs
Tetrapoda	~359 Mya	167 species	187 homologs
Amniota	~326 Mya	165 species	185 homologs
Mammalia	~184 Mya	145 species	161 homologs
Theria	~166 Mya	143 species	157 homologs
Eutheria	~102 Mya	135 species	147 homologs
Boreoeutheria	~95 Mya	126 species	138 homologs
Laurasiatheria	~88 Mya	38 species	46 homologs
Carnivora	~56 Mya	19 species	27 homologs
Caniformia	~44 Mya	13 species	21 homologs
Caniformia_b	~44 Mya	7 species	15 homologs (dupl. node) 11 homologs (dupl. node) 6 homologs
Ursidae	~23 Mya	5 species	4 homologs
Ursus	~6 Mya	3 species	2 homologs
Polar bear	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here