Root species for Dapk1 (ENSPEMG00000022627) (Northern American deer mouse) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 279 species | |
Bilateria | ~580 Mya | 277 species | |
Chordata | ~550 Mya | 273 species | 795 homologs (oldest homol.) |
Vertebrata | ~550 Mya | 269 species | 791 homologs (dupl. node) 310 homologs |
Euteleostomi | ~420 Mya | 265 species | 302 homologs |
Sarcopterygii | ~400 Mya | 169 species | 191 homologs |
Tetrapoda | ~359 Mya | 167 species | 189 homologs |
Amniota | ~326 Mya | 165 species | 187 homologs |
Mammalia | ~184 Mya | 145 species | 163 homologs |
Theria | ~166 Mya | 143 species | 159 homologs |
Eutheria | ~102 Mya | 135 species | 149 homologs |
Boreoeutheria | ~95 Mya | 126 species | 140 homologs |
Euarchontoglires | ~90 Mya | 87 species | 91 homologs |
Glires | ~81 Mya | 43 species | 47 homologs |
Rodentia | ~80 Mya | 39 species | 43 homologs |
Sciurognathi | ~79 Mya | 25 species | 25 homologs |
Myomorpha | ~51 Mya | 22 species | 22 homologs |
Muroidea | ~44 Mya | 20 species | 20 homologs |
Cricetidae | ~20 Mya | 9 species | 9 homologs |
Cricetidae_B | ~18 Mya | 3 species | 3 homologs |
Northern American deer mouse | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'