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Genomicus v95.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 95.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for DAOA (ENSGGOG00000023099) (Gorilla) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 279 species
Bilateria Bilateria ~580 Mya 277 species
Chordata Chordata ~550 Mya 273 species
Vertebrata Vertebrata ~550 Mya 269 species
Euteleostomi Euteleostomi ~420 Mya 265 species
Sarcopterygii Sarcopterygii ~400 Mya 169 species
Tetrapoda Tetrapoda ~359 Mya 167 species
Amniota Amniota ~326 Mya 165 species
Mammalia Mammalia ~184 Mya 145 species
Theria Theria ~166 Mya 143 species
Eutheria Eutheria ~102 Mya 135 species
Boreoeutheria Boreoeutheria ~95 Mya 126 species
Euarchontoglires Euarchontoglires ~90 Mya 87 species
Primates Primates ~83 Mya 42 species
Haplorrhini Haplorrhini ~57 Mya 36 species
Simiiformes Simiiformes ~45 Mya 34 species
Catarrhini Catarrhini ~30 Mya 27 species 19 homologs (oldest homol.)
Hominoidea Hominoidea ~25 Mya 11 species 11 homologs
Hominidae Hominidae ~16 Mya 9 species 9 homologs
Homo/Pan/Gorilla group Homo/Pan/Gorilla group ~9 Mya 7 species 7 homologs
Gorilla Gorilla ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'