Root species for ACTRT2 (ENSSTOG00000026986) (Squirrel) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 279 species | |
Bilateria | ~580 Mya | 277 species | |
Chordata | ~550 Mya | 273 species | |
Vertebrata | ~550 Mya | 269 species | |
Euteleostomi | ~420 Mya | 265 species | |
Sarcopterygii | ~400 Mya | 169 species | |
Tetrapoda | ~359 Mya | 167 species | |
Amniota | ~326 Mya | 165 species | 124 homologs (oldest homol.) |
Mammalia | ~184 Mya | 145 species | 116 homologs |
Theria | ~166 Mya | 143 species | 114 homologs |
Eutheria | ~102 Mya | 135 species | 109 homologs |
Boreoeutheria | ~95 Mya | 126 species | 102 homologs |
Euarchontoglires | ~90 Mya | 87 species | 70 homologs |
Glires | ~81 Mya | 43 species | 39 homologs |
Rodentia | ~80 Mya | 39 species | 38 homologs |
Sciurognathi | ~79 Mya | 25 species | 25 homologs |
Squirrel | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'