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Genomicus v95.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 95.01
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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for Actrt2 (ENSCGRG00000019600) (Chinese hamster Crigri) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 279 species
Bilateria Bilateria ~580 Mya 277 species
Chordata Chordata ~550 Mya 273 species
Vertebrata Vertebrata ~550 Mya 269 species
Euteleostomi Euteleostomi ~420 Mya 265 species
Sarcopterygii Sarcopterygii ~400 Mya 169 species
Tetrapoda Tetrapoda ~359 Mya 167 species
Amniota Amniota ~326 Mya 165 species 124 homologs (oldest homol.)
Mammalia Mammalia ~184 Mya 145 species 116 homologs
Theria Theria ~166 Mya 143 species 114 homologs
Eutheria Eutheria ~102 Mya 135 species 109 homologs
Boreoeutheria Boreoeutheria ~95 Mya 126 species 102 homologs
Euarchontoglires Euarchontoglires ~90 Mya 87 species 70 homologs
Glires Glires ~81 Mya 43 species 39 homologs
Rodentia Rodentia ~80 Mya 39 species 38 homologs
Sciurognathi Sciurognathi ~79 Mya 25 species 25 homologs
Myomorpha Myomorpha ~51 Mya 22 species 22 homologs
Muroidea Muroidea ~44 Mya 20 species 20 homologs
Cricetidae Cricetidae ~20 Mya 9 species 9 homologs
Cricetinae Cricetinae ~17 Mya 5 species 5 homologs
Cricetulus griseus Cricetulus griseus ~0 Mya 3 species 3 homologs
Chinese hamster Crigri Chinese hamster Crigri ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'