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Genomicus v95.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 95.01
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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for IL34 (ENSUMAG00000017778) (Polar bear) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 279 species
Bilateria Bilateria ~580 Mya 277 species
Chordata Chordata ~550 Mya 273 species
Vertebrata Vertebrata ~550 Mya 269 species
Euteleostomi Euteleostomi ~420 Mya 265 species
Sarcopterygii Sarcopterygii ~400 Mya 169 species
Tetrapoda Tetrapoda ~359 Mya 167 species
Amniota Amniota ~326 Mya 165 species
Mammalia Mammalia ~184 Mya 145 species 141 homologs (oldest homol.)
Theria Theria ~166 Mya 143 species 139 homologs
Eutheria Eutheria ~102 Mya 135 species 131 homologs
Boreoeutheria Boreoeutheria ~95 Mya 126 species 123 homologs
Laurasiatheria Laurasiatheria ~88 Mya 38 species 36 homologs
Carnivora Carnivora ~56 Mya 19 species 19 homologs
Caniformia Caniformia ~44 Mya 13 species 13 homologs
Caniformia_b Caniformia_b ~44 Mya 7 species 7 homologs
Ursidae Ursidae ~23 Mya 5 species 5 homologs
Ursus Ursus ~6 Mya 3 species 3 homologs
Polar bear Polar bear ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'