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Genomicus v95.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 95.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for EPN2 (ENSOGAG00000012015) (Bushbaby) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 279 species
Bilateria Bilateria ~580 Mya 277 species
Chordata Chordata ~550 Mya 273 species 287 homologs (oldest homol.)
Vertebrata Vertebrata ~550 Mya 269 species 283 homologs
Euteleostomi Euteleostomi ~420 Mya 265 species 279 homologs
Sarcopterygii Sarcopterygii ~400 Mya 169 species 177 homologs
Tetrapoda Tetrapoda ~359 Mya 167 species 175 homologs
Amniota Amniota ~326 Mya 165 species 173 homologs
Mammalia Mammalia ~184 Mya 145 species 153 homologs
Theria Theria ~166 Mya 143 species 151 homologs
Eutheria Eutheria ~102 Mya 135 species 143 homologs
Boreoeutheria Boreoeutheria ~95 Mya 126 species 135 homologs
Euarchontoglires Euarchontoglires ~90 Mya 87 species 93 homologs
Primates Primates ~83 Mya 42 species 46 homologs
Strepsirrhini Strepsirrhini ~69 Mya 5 species 9 homologs
Bushbaby Bushbaby ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'