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Genomicus v95.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 95.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for Ctsh (ENSJJAG00000009132) (Lesser Egyptian jerboa) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 279 species
Bilateria Bilateria ~580 Mya 277 species 312 homologs (oldest homol.)
Chordata Chordata ~550 Mya 273 species 309 homologs
Vertebrata Vertebrata ~550 Mya 269 species 306 homologs
Euteleostomi Euteleostomi ~420 Mya 265 species 305 homologs
Sarcopterygii Sarcopterygii ~400 Mya 169 species 166 homologs
Tetrapoda Tetrapoda ~359 Mya 167 species 164 homologs
Amniota Amniota ~326 Mya 165 species 163 homologs
Mammalia Mammalia ~184 Mya 145 species 143 homologs
Theria Theria ~166 Mya 143 species 142 homologs
Eutheria Eutheria ~102 Mya 135 species 134 homologs
Boreoeutheria Boreoeutheria ~95 Mya 126 species 127 homologs
Euarchontoglires Euarchontoglires ~90 Mya 87 species 86 homologs
Glires Glires ~81 Mya 43 species 42 homologs
Rodentia Rodentia ~80 Mya 39 species 38 homologs
Sciurognathi Sciurognathi ~79 Mya 25 species 24 homologs
Myomorpha Myomorpha ~51 Mya 22 species 21 homologs
Lesser Egyptian jerboa Lesser Egyptian jerboa ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'