Root species for Ctsh (MGP_PahariEiJ_G0015383) (Shrew mouse) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 279 species | |
Bilateria | ~580 Mya | 277 species | 312 homologs (oldest homol.) |
Chordata | ~550 Mya | 273 species | 309 homologs |
Vertebrata | ~550 Mya | 269 species | 306 homologs |
Euteleostomi | ~420 Mya | 265 species | 305 homologs |
Sarcopterygii | ~400 Mya | 169 species | 166 homologs |
Tetrapoda | ~359 Mya | 167 species | 164 homologs |
Amniota | ~326 Mya | 165 species | 163 homologs |
Mammalia | ~184 Mya | 145 species | 143 homologs |
Theria | ~166 Mya | 143 species | 142 homologs |
Eutheria | ~102 Mya | 135 species | 134 homologs |
Boreoeutheria | ~95 Mya | 126 species | 127 homologs |
Euarchontoglires | ~90 Mya | 87 species | 86 homologs |
Glires | ~81 Mya | 43 species | 42 homologs |
Rodentia | ~80 Mya | 39 species | 38 homologs |
Sciurognathi | ~79 Mya | 25 species | 24 homologs |
Myomorpha | ~51 Mya | 22 species | 21 homologs |
Muroidea | ~44 Mya | 20 species | 19 homologs |
Murinae | ~20 Mya | 9 species | 8 homologs |
Mus | ~7 Mya | 7 species | 6 homologs |
Shrew mouse | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'