A more recent version of genomicus is available here

 
Genomicus v95.01 Title
Genomicus v95.01 Logo


DYOGEN group

web-code version: 2017-06-13
database version: 95.01
Tweets by GenomicusDB

email logo Contact us.



IBENS Logo ENS Logo CNRS Logo ANCESTROME Logo



Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for KCNK2 (ENSOARG00000008173) (Sheep) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 279 species
Bilateria Bilateria ~580 Mya 277 species
Chordata Chordata ~550 Mya 273 species
Vertebrata Vertebrata ~550 Mya 269 species 369 homologs (oldest homol.)
Euteleostomi Euteleostomi ~420 Mya 265 species 366 homologs
Sarcopterygii Sarcopterygii ~400 Mya 169 species 173 homologs
Tetrapoda Tetrapoda ~359 Mya 167 species 171 homologs
Amniota Amniota ~326 Mya 165 species 169 homologs
Mammalia Mammalia ~184 Mya 145 species 147 homologs
Theria Theria ~166 Mya 143 species 145 homologs
Eutheria Eutheria ~102 Mya 135 species 137 homologs
Boreoeutheria Boreoeutheria ~95 Mya 126 species 128 homologs
Laurasiatheria Laurasiatheria ~88 Mya 38 species 38 homologs
Cetartiodactyla Cetartiodactyla ~61 Mya 9 species 9 homologs
Bovidae Bovidae ~25 Mya 5 species 5 homologs
Caprinae Caprinae ~9 Mya 3 species 3 homologs
Sheep Sheep ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'