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Genomicus v95.01 Title
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DYOGEN group

web-code version: 2017-06-13
database version: 95.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for DAO (ENSG00000110887) (Human) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 279 species
Bilateria Bilateria ~580 Mya 277 species 573 homologs (oldest homol. - dupl. node)
286 homologs
Chordata Chordata ~550 Mya 273 species 283 homologs
Vertebrata Vertebrata ~550 Mya 269 species 282 homologs
Euteleostomi Euteleostomi ~420 Mya 265 species 278 homologs
Sarcopterygii Sarcopterygii ~400 Mya 169 species 174 homologs
Tetrapoda Tetrapoda ~359 Mya 167 species 172 homologs
Amniota Amniota ~326 Mya 165 species 170 homologs
Mammalia Mammalia ~184 Mya 145 species 148 homologs
Theria Theria ~166 Mya 143 species 146 homologs
Eutheria Eutheria ~102 Mya 135 species 138 homologs
Boreoeutheria Boreoeutheria ~95 Mya 126 species 130 homologs
Euarchontoglires Euarchontoglires ~90 Mya 87 species 89 homologs
Primates Primates ~83 Mya 42 species 44 homologs
Haplorrhini Haplorrhini ~57 Mya 36 species 38 homologs
Simiiformes Simiiformes ~45 Mya 34 species 36 homologs
Catarrhini Catarrhini ~30 Mya 27 species 29 homologs
Hominoidea Hominoidea ~25 Mya 11 species 13 homologs
Hominidae Hominidae ~16 Mya 9 species 11 homologs
Homo/Pan/Gorilla group Homo/Pan/Gorilla group ~9 Mya 7 species 9 homologs
Homo/Pan group Homo/Pan group ~5 Mya 5 species 7 homologs
Human Human ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'