Root species for DAO (ENSGGOG00000013247) (Gorilla) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 279 species | |
Bilateria | ~580 Mya | 277 species | 573 homologs (oldest homol. - dupl. node) 286 homologs |
Chordata | ~550 Mya | 273 species | 283 homologs |
Vertebrata | ~550 Mya | 269 species | 282 homologs |
Euteleostomi | ~420 Mya | 265 species | 278 homologs |
Sarcopterygii | ~400 Mya | 169 species | 174 homologs |
Tetrapoda | ~359 Mya | 167 species | 172 homologs |
Amniota | ~326 Mya | 165 species | 170 homologs |
Mammalia | ~184 Mya | 145 species | 148 homologs |
Theria | ~166 Mya | 143 species | 146 homologs |
Eutheria | ~102 Mya | 135 species | 138 homologs |
Boreoeutheria | ~95 Mya | 126 species | 130 homologs |
Euarchontoglires | ~90 Mya | 87 species | 89 homologs |
Primates | ~83 Mya | 42 species | 44 homologs |
Haplorrhini | ~57 Mya | 36 species | 38 homologs |
Simiiformes | ~45 Mya | 34 species | 36 homologs |
Catarrhini | ~30 Mya | 27 species | 29 homologs |
Hominoidea | ~25 Mya | 11 species | 13 homologs |
Hominidae | ~16 Mya | 9 species | 11 homologs |
Homo/Pan/Gorilla group | ~9 Mya | 7 species | 9 homologs |
Gorilla | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'