Root species for PHOX2B (ENSG00000109132) (Human) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 159 species | |
Bilateria | ~580 Mya | 157 species | 1658 homologs (oldest homol. - dupl. node) 1641 homologs (dupl. node) 141 homologs |
Chordata | ~550 Mya | 153 species | 140 homologs |
Vertebrata | ~550 Mya | 149 species | 139 homologs |
Euteleostomi | ~420 Mya | 147 species | 138 homologs |
Sarcopterygii | ~400 Mya | 125 species | 116 homologs |
Tetrapoda | ~359 Mya | 123 species | 114 homologs |
Amniota | ~326 Mya | 121 species | 112 homologs |
Mammalia | ~184 Mya | 107 species | 100 homologs |
Theria | ~166 Mya | 105 species | 99 homologs |
Eutheria | ~102 Mya | 99 species | 93 homologs |
Boreoeutheria | ~95 Mya | 90 species | 85 homologs |
Euarchontoglires | ~90 Mya | 67 species | 63 homologs |
Primates | ~83 Mya | 22 species | 20 homologs |
Haplorrhini | ~57 Mya | 18 species | 16 homologs |
Simiiformes | ~45 Mya | 16 species | 15 homologs |
Catarrhini | ~31 Mya | 14 species | 13 homologs |
Hominoidea | ~25 Mya | 9 species | 9 homologs |
Hominidae | ~16 Mya | 7 species | 7 homologs |
Homo/Pan/Gorilla group | ~9 Mya | 5 species | 5 homologs |
Homo/Pan group | ~5 Mya | 3 species | 3 homologs |
Human | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'