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Root species for fgf1a (ENSDARG00000017542) (Zebrafish) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ![]() |
490 species ![]() |
|
Bilateria | ![]() |
488 species ![]() |
|
Chordata | ![]() |
484 species ![]() |
|
Vertebrata | ![]() |
480 species ![]() |
329 homologs (oldest homol.) ![]() |
Gnathostomata | ![]() |
476 species ![]() |
326 homologs ![]() |
Euteleostomi | ![]() |
474 species ![]() |
325 homologs ![]() |
Actinopterygii | ![]() |
153 species ![]() |
324 homologs ![]() |
Neopterygii | ![]() |
151 species ![]() |
323 homologs ![]() |
Osteoglossocephalai | ![]() |
149 species ![]() |
322 homologs (dupl. node) ![]() 317 homologs (dupl. node) ![]() 156 homologs ![]() |
Clupeocephala | ![]() |
145 species ![]() |
155 homologs ![]() |
Otomorpha | ![]() |
25 species ![]() |
31 homologs ![]() |
Otophysi | ![]() |
21 species ![]() |
28 homologs ![]() |
Cyprinidae | ![]() |
13 species ![]() |
21 homologs ![]() |
Zebrafish | ![]() |
1 species ![]() |
1 homolog ![]() |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'