Genomicus v110.01 Title
Genomicus v110.01 Logo


DYOGEN group

web-code version: 2021-08-15
database version: 110.01
Tweets by GenomicusDB

email logo Contact us.



IFB Logo Elixir Logo
IBENS Logo ENS Logo CNRS Logo



Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for svep1l (ENSXETG00000014574) (Frog) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 399 species
Bilateria Bilateria ~580 Mya 397 species
Chordata Chordata ~550 Mya 393 species 1202 homologs (oldest homol.)
Vertebrata Vertebrata ~550 Mya 389 species 1197 homologs
Gnathostomata Gnathostomata ~473 Mya 385 species 1196 homologs (dupl. node)
553 homologs
Euteleostomi Euteleostomi ~420 Mya 383 species 552 homologs
Sarcopterygii Sarcopterygii ~400 Mya 253 species 282 homologs
Tetrapoda Tetrapoda ~359 Mya 251 species 281 homologs
Anura Anura ~203 Mya 3 species 15 homologs (dupl. node)
12 homologs (dupl. node)
10 homologs (dupl. node)
5 homologs
Frog Frog ~0 Mya 1 species 3 homologs (dupl. node)
2 homologs (dupl. node)
1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'