Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for krt9.2 (ENSXETG00000035234) (Frog)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species
Chordata	~550 Mya	393 species
Vertebrata	~550 Mya	389 species	2046 homologs (oldest homol. - dupl. node) 1934 homologs (dupl. node) 1594 homologs
Gnathostomata	~473 Mya	385 species	1593 homologs
Euteleostomi	~420 Mya	383 species	1589 homologs (dupl. node) 1544 homologs (dupl. node) 1373 homologs (dupl. node) 1205 homologs
Sarcopterygii	~400 Mya	253 species	180 homologs
Tetrapoda	~359 Mya	251 species	178 homologs (dupl. node) 151 homologs
Anura	~203 Mya	3 species	11 homologs
Frog	~0 Mya	1 species	3 homologs (dupl. node) 1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'