Genomicus v110.01 Title
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DYOGEN group

web-code version: 2021-08-15
database version: 110.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for fmo5.1 (ENSXETG00000009900) (Frog) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 399 species
Bilateria Bilateria ~580 Mya 397 species
Chordata Chordata ~550 Mya 393 species 843 homologs (oldest homol.)
Vertebrata Vertebrata ~550 Mya 389 species 837 homologs
Gnathostomata Gnathostomata ~473 Mya 385 species 829 homologs
Euteleostomi Euteleostomi ~420 Mya 383 species 825 homologs (dupl. node)
802 homologs
Sarcopterygii Sarcopterygii ~400 Mya 253 species 174 homologs
Tetrapoda Tetrapoda ~359 Mya 251 species 172 homologs
Anura Anura ~203 Mya 3 species 13 homologs (dupl. node)
7 homologs
Frog Frog ~0 Mya 1 species 3 homologs (dupl. node)
2 homologs (dupl. node)
1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'