Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for C11orf70 (ENSGALG00010007928) (Chicken)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species
Chordata	~550 Mya	393 species	397 homologs (oldest homol.)
Vertebrata	~550 Mya	389 species	393 homologs
Gnathostomata	~473 Mya	385 species	390 homologs
Euteleostomi	~420 Mya	383 species	388 homologs
Sarcopterygii	~400 Mya	253 species	256 homologs
Tetrapoda	~359 Mya	251 species	254 homologs
Amniota	~326 Mya	247 species	250 homologs
Sauria	~267 Mya	53 species	54 homologs
Archelosauria	~250 Mya	37 species	36 homologs
Archosauria	~236 Mya	27 species	27 homologs
Aves	~111 Mya	25 species	25 homologs
Neognathae	~105 Mya	23 species	23 homologs
Galloanserae	~80 Mya	9 species	9 homologs
Phasianidae	~42 Mya	5 species	5 homologs
Phasianidae_b	~42 Mya	3 species	3 homologs
Chicken	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'