Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSTMTG00000016831 (Three-toed box turtle)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species	2392 homologs (oldest homol. - dupl. node) 1909 homologs (dupl. node) 1545 homologs
Chordata	~550 Mya	393 species	1515 homologs (dupl. node) 397 homologs
Vertebrata	~550 Mya	389 species	396 homologs
Gnathostomata	~473 Mya	385 species	392 homologs
Euteleostomi	~420 Mya	383 species	390 homologs
Sarcopterygii	~400 Mya	253 species	253 homologs
Tetrapoda	~359 Mya	251 species	251 homologs
Amniota	~326 Mya	247 species	247 homologs
Sauria	~267 Mya	53 species	53 homologs
Archelosauria	~250 Mya	37 species	38 homologs
Cryptodira	~161 Mya	9 species	10 homologs
Testudinoidea	~80 Mya	7 species	8 homologs
Emydidae	~40 Mya	3 species	4 homologs
Three-toed box turtle	~0 Mya	1 species	2 homologs (dupl. node) 1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'