Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSSMAG00000001032 (Turbot)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species
Chordata	~550 Mya	393 species
Vertebrata	~550 Mya	389 species	561 homologs (oldest homol.)
Gnathostomata	~473 Mya	385 species	558 homologs
Euteleostomi	~420 Mya	383 species	554 homologs
Actinopterygii	~386 Mya	129 species	269 homologs
Neopterygii	~314 Mya	127 species	267 homologs
Osteoglossocephalai	~267 Mya	125 species	265 homologs (dupl. node) 128 homologs
Clupeocephala	~229 Mya	121 species	124 homologs
Euteleosteomorpha	~206 Mya	101 species	120 homologs
Acanthomorphata	~148 Mya	87 species	89 homologs
Euacanthomorphacea	~132 Mya	85 species	88 homologs
Percomorphaceae	~128 Mya	83 species	86 homologs
Percomorphaceae_B	~128 Mya	81 species	84 homologs
Percomorphaceae_C	~128 Mya	35 species	36 homologs
Percomorphaceae_D	~128 Mya	15 species	15 homologs
Carangaria	~83 Mya	9 species	9 homologs
Pleuronectoidei	~64 Mya	3 species	3 homologs
Turbot	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'