Genomicus v110.01 Title
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DYOGEN group

web-code version: 2021-08-15
database version: 110.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for F2RL1 (ENSSARG00000000095) (Common shrew) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 399 species
Bilateria Bilateria ~580 Mya 397 species
Chordata Chordata ~550 Mya 393 species
Vertebrata Vertebrata ~550 Mya 389 species 2757 homologs (oldest homol. - dupl. node)
2318 homologs
Gnathostomata Gnathostomata ~473 Mya 385 species 2314 homologs (dupl. node)
1330 homologs (dupl. node)
645 homologs
Euteleostomi Euteleostomi ~420 Mya 383 species 643 homologs
Sarcopterygii Sarcopterygii ~400 Mya 253 species 252 homologs
Tetrapoda Tetrapoda ~359 Mya 251 species 246 homologs
Amniota Amniota ~326 Mya 247 species 242 homologs
Mammalia Mammalia ~184 Mya 193 species 190 homologs
Theria Theria ~166 Mya 191 species 189 homologs
Eutheria Eutheria ~102 Mya 181 species 179 homologs
Boreoeutheria Boreoeutheria ~95 Mya 171 species 169 homologs
Laurasiatheria Laurasiatheria ~88 Mya 75 species 71 homologs
Eulipotyphla Eulipotyphla ~68 Mya 3 species 2 homologs
Common shrew Common shrew ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'