Root species for hist2h3c (ENSTNIG00000008773) (Tetraodon) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 399 species | |
Bilateria | ~580 Mya | 397 species | 1193 homologs (oldest homol. - dupl. node) 502 homologs |
Chordata | ~550 Mya | 393 species | 489 homologs |
Vertebrata | ~550 Mya | 389 species | 476 homologs |
Gnathostomata | ~473 Mya | 385 species | 475 homologs |
Euteleostomi | ~420 Mya | 383 species | 474 homologs |
Actinopterygii | ~386 Mya | 129 species | 133 homologs |
Neopterygii | ~314 Mya | 127 species | 123 homologs |
Osteoglossocephalai | ~267 Mya | 125 species | 122 homologs |
Clupeocephala | ~229 Mya | 121 species | 119 homologs |
Euteleosteomorpha | ~206 Mya | 101 species | 85 homologs |
Acanthomorphata | ~148 Mya | 87 species | 80 homologs |
Euacanthomorphacea | ~132 Mya | 85 species | 76 homologs |
Percomorphaceae | ~128 Mya | 83 species | 72 homologs |
Percomorphaceae_B | ~128 Mya | 81 species | 71 homologs |
Percomorphaceae_C | ~128 Mya | 35 species | 36 homologs |
Eupercaria | ~110 Mya | 19 species | 31 homologs (dupl. node) 15 homologs (dupl. node) 3 homologs |
Tetraodontidae | ~51 Mya | 3 species | 2 homologs |
Tetraodon | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'