Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for TMBIM6 (ENSANAG00000025342) (Mas night monkey)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species	1435 homologs (oldest homol.)
Bilateria	~580 Mya	397 species	1433 homologs (dupl. node) 1035 homologs (dupl. node) 559 homologs
Chordata	~550 Mya	393 species	556 homologs
Vertebrata	~550 Mya	389 species	552 homologs
Gnathostomata	~473 Mya	385 species	548 homologs
Euteleostomi	~420 Mya	383 species	546 homologs
Sarcopterygii	~400 Mya	253 species	326 homologs
Tetrapoda	~359 Mya	251 species	324 homologs
Amniota	~326 Mya	247 species	314 homologs
Mammalia	~184 Mya	193 species	265 homologs
Theria	~166 Mya	191 species	263 homologs
Eutheria	~102 Mya	181 species	236 homologs
Boreoeutheria	~95 Mya	171 species	226 homologs
Euarchontoglires	~90 Mya	95 species	123 homologs
Primates	~83 Mya	47 species	68 homologs
Haplorrhini	~57 Mya	39 species	58 homologs
Simiiformes	~45 Mya	37 species	54 homologs
Platyrrhini	~18 Mya	7 species	9 homologs
Mas night monkey	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'