Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for MAT1A (ENSOARG00020026255) (Rambouillet Sheep)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species	1337 homologs (oldest homol.)
Bilateria	~580 Mya	397 species	1333 homologs
Chordata	~550 Mya	393 species	1323 homologs
Vertebrata	~550 Mya	389 species	1319 homologs (dupl. node) 1301 homologs (dupl. node) 1119 homologs
Gnathostomata	~473 Mya	385 species	1116 homologs (dupl. node) 509 homologs
Euteleostomi	~420 Mya	383 species	507 homologs
Sarcopterygii	~400 Mya	253 species	249 homologs
Tetrapoda	~359 Mya	251 species	247 homologs
Amniota	~326 Mya	247 species	243 homologs
Mammalia	~184 Mya	193 species	189 homologs
Theria	~166 Mya	191 species	187 homologs
Eutheria	~102 Mya	181 species	177 homologs
Boreoeutheria	~95 Mya	171 species	167 homologs
Laurasiatheria	~88 Mya	75 species	72 homologs
Laurasiatheria_a	~77 Mya	71 species	69 homologs
Artiodactyla	~61 Mya	37 species	35 homologs
Artiodactyla_a	~61 Mya	33 species	31 homologs
Artiodactyla_b	~61 Mya	29 species	27 homologs
Pecora	~27 Mya	17 species	16 homologs
Percora_a	~27 Mya	15 species	14 homologs
Bovidae	~25 Mya	13 species	12 homologs
Caprinae	~9 Mya	3 species	3 homologs
Rambouillet Sheep	~0 Mya	1 species	1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'