Genomicus v110.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00940000153769.F.n (Cyprinodontiformes)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	399 species
Bilateria	~580 Mya	397 species
Chordata	~550 Mya	393 species
Vertebrata	~550 Mya	389 species	1508 homologs (oldest homol. - dupl. node) 1504 homologs (dupl. node) 843 homologs (dupl. node) 563 homologs
Gnathostomata	~473 Mya	385 species	560 homologs
Euteleostomi	~420 Mya	383 species	558 homologs
Actinopterygii	~386 Mya	129 species	292 homologs
Neopterygii	~314 Mya	127 species	290 homologs (dupl. node) 136 homologs
Osteoglossocephalai	~267 Mya	125 species	135 homologs
Clupeocephala	~229 Mya	121 species	131 homologs
Euteleosteomorpha	~206 Mya	101 species	106 homologs
Acanthomorphata	~148 Mya	87 species	87 homologs
Euacanthomorphacea	~132 Mya	85 species	85 homologs
Percomorphaceae	~128 Mya	83 species	83 homologs
Percomorphaceae_B	~128 Mya	81 species	81 homologs
Ovalentaria	~128 Mya	45 species	45 homologs
Atherinomorphae	~93 Mya	23 species	23 homologs
Cyprinodontiformes	~74 Mya	15 species	15 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'