Root species for GALK2 (ENSPPAG00000039106) (pygmy chimpanzee) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 373 species | 1130 homologs (oldest homol. - dupl. node) 753 homologs (dupl. node) 383 homologs |
Bilateria | ~580 Mya | 371 species | 379 homologs |
Chordata | ~550 Mya | 367 species | 375 homologs |
Vertebrata | ~550 Mya | 363 species | 371 homologs |
Gnathostomata | ~473 Mya | 359 species | 367 homologs |
Euteleostomi | ~420 Mya | 357 species | 365 homologs |
Sarcopterygii | ~400 Mya | 241 species | 248 homologs |
Tetrapoda | ~359 Mya | 239 species | 246 homologs |
Amniota | ~326 Mya | 237 species | 244 homologs |
Mammalia | ~184 Mya | 169 species | 174 homologs |
Theria | ~166 Mya | 167 species | 170 homologs |
Eutheria | ~102 Mya | 158 species | 161 homologs |
Boreoeutheria | ~95 Mya | 149 species | 152 homologs |
Euarchontoglires | ~90 Mya | 104 species | 107 homologs |
Primates | ~83 Mya | 45 species | 48 homologs |
Haplorrhini | ~57 Mya | 38 species | 42 homologs |
Simiiformes | ~45 Mya | 36 species | 40 homologs |
Catarrhini | ~30 Mya | 29 species | 33 homologs |
Hominoidea | ~25 Mya | 11 species | 11 homologs |
Hominidae | ~16 Mya | 9 species | 9 homologs |
Homo/Pan/Gorilla group | ~9 Mya | 7 species | 7 homologs |
Homo/Pan group | ~5 Mya | 5 species | 5 homologs |
Pan | ~3 Mya | 3 species | 3 homologs |
pygmy chimpanzee | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'