Genomicus v100.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSNSUG00000003399 (Mainland tiger snake)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	490 species
Bilateria	~580 Mya	488 species
Chordata	~550 Mya	484 species
Vertebrata	~550 Mya	480 species
Gnathostomata	~473 Mya	476 species
Euteleostomi	~420 Mya	474 species	375 homologs (oldest homol.)
Sarcopterygii	~400 Mya	320 species	328 homologs
Tetrapoda	~359 Mya	318 species	327 homologs
Amniota	~326 Mya	316 species	325 homologs
Sauria	~267 Mya	115 species	79 homologs
Lepidosauria	~251 Mya	17 species	43 homologs
Episquamata	~178 Mya	15 species	41 homologs
Toxicofera	~168 Mya	11 species	33 homologs
Elapidae	~32 Mya	5 species	32 homologs (dupl. node) 12 homologs
Acanthophiinae	~27 Mya	3 species	11 homologs (dupl. node) 9 homologs
Mainland tiger snake	~0 Mya	1 species	7 homologs (dupl. node) 6 homologs (dupl. node) 1 homolog

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here