Genomicus v94.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00390000002766.c (Atlantogenata)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	261 species
Bilateria	~580 Mya	259 species	465 homologs (oldest homol.)
Chordata	~550 Mya	255 species	460 homologs
Vertebrata	~550 Mya	251 species	459 homologs (dupl. node) 248 homologs
Euteleostomi	~420 Mya	247 species	244 homologs
Sarcopterygii	~400 Mya	151 species	152 homologs
Tetrapoda	~359 Mya	149 species	150 homologs
Amniota	~326 Mya	147 species	148 homologs
Mammalia	~184 Mya	133 species	128 homologs
Theria	~166 Mya	131 species	127 homologs
Eutheria	~102 Mya	125 species	121 homologs
Atlantogenata	~100 Mya	8 species	8 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here