Genomicus v101.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00390000006218 (Euacanthomorphacea)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	534 species
Bilateria	~580 Mya	532 species
Chordata	~550 Mya	528 species	551 homologs (oldest homol.)
Vertebrata	~550 Mya	524 species	547 homologs
Gnathostomata	~473 Mya	520 species	544 homologs
Euteleostomi	~420 Mya	518 species	542 homologs
Actinopterygii	~386 Mya	161 species	175 homologs
Neopterygii	~314 Mya	159 species	173 homologs
Osteoglossocephalai	~267 Mya	157 species	171 homologs
Clupeocephala	~229 Mya	153 species	167 homologs
Euteleosteomorpha	~206 Mya	127 species	125 homologs
Acanthomorphata	~148 Mya	113 species	111 homologs
Euacanthomorphacea	~132 Mya	111 species	109 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here