Genomicus v100.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00940000160941 (Ovalentaria)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	490 species
Bilateria	~580 Mya	488 species
Chordata	~550 Mya	484 species
Vertebrata	~550 Mya	480 species
Gnathostomata	~473 Mya	476 species	518 homologs (oldest homol.)
Euteleostomi	~420 Mya	474 species	516 homologs
Actinopterygii	~386 Mya	153 species	205 homologs
Neopterygii	~314 Mya	151 species	203 homologs
Osteoglossocephalai	~267 Mya	149 species	201 homologs
Clupeocephala	~229 Mya	145 species	197 homologs
Euteleosteomorpha	~206 Mya	119 species	159 homologs
Acanthomorphata	~148 Mya	107 species	135 homologs
Euacanthomorphacea	~132 Mya	105 species	133 homologs
Percomorphaceae	~128 Mya	103 species	131 homologs
Percomorphaceae_A	~110 Mya	101 species	129 homologs
Percomorphaceae_B	~128 Mya	95 species	123 homologs
Ovalentaria	~128 Mya	57 species	85 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here