Genomicus v110.01 Title
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DYOGEN group

web-code version: 2021-08-15
database version: 110.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for Nkx3-1 (ENSMUSG00000022061) (Mouse) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 399 species
Bilateria Bilateria ~580 Mya 397 species
Chordata Chordata ~550 Mya 393 species
Vertebrata Vertebrata ~550 Mya 389 species
Gnathostomata Gnathostomata ~473 Mya 385 species
Euteleostomi Euteleostomi ~420 Mya 383 species 348 homologs (oldest homol.)
Sarcopterygii Sarcopterygii ~400 Mya 253 species 234 homologs
Tetrapoda Tetrapoda ~359 Mya 251 species 233 homologs
Amniota Amniota ~326 Mya 247 species 230 homologs
Mammalia Mammalia ~184 Mya 193 species 184 homologs
Theria Theria ~166 Mya 191 species 182 homologs
Eutheria Eutheria ~102 Mya 181 species 173 homologs
Boreoeutheria Boreoeutheria ~95 Mya 171 species 163 homologs
Euarchontoglires Euarchontoglires ~90 Mya 95 species 92 homologs
Euarchontoglires_A Euarchontoglires_A ~90 Mya 47 species 46 homologs
Glires Glires ~81 Mya 45 species 44 homologs
Rodentia Rodentia ~80 Mya 41 species 40 homologs
Rodentia_B Rodentia_B ~80 Mya 25 species 25 homologs
Myomorpha Myomorpha ~51 Mya 23 species 23 homologs
Muroidea Muroidea ~44 Mya 21 species 21 homologs
Muroidea_A Muroidea_A ~44 Mya 19 species 19 homologs
Murinae Murinae ~20 Mya 11 species 11 homologs
Mus Mus ~7 Mya 9 species 9 homologs
Mus_A Mus_A ~6 Mya 7 species 7 homologs
Mus_B Mus_B ~2 Mya 5 species 5 homologs
Mouse Mouse ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'