Genomicus v98.01 - Gene Search

Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

PhyloView will show the conservation of the neighbourhood of the reference gene in the other species, according to the gene phylogenetic tree.
AlignView will align the gene order of the selected species, according to the species phylogenetic tree.

Root species for ENSGT00940000158332.a.b (Catarrhini)		AlignView depth	PhyloView depth
Fungi/Metazoa group	~1500 Mya	373 species
Bilateria	~580 Mya	371 species
Chordata	~550 Mya	367 species
Vertebrata	~550 Mya	363 species
Gnathostomata	~473 Mya	359 species
Euteleostomi	~420 Mya	357 species
Sarcopterygii	~400 Mya	241 species
Tetrapoda	~359 Mya	239 species
Amniota	~326 Mya	237 species
Mammalia	~184 Mya	169 species
Theria	~166 Mya	167 species
Eutheria	~102 Mya	158 species	210 homologs (oldest homol.)
Boreoeutheria	~95 Mya	149 species	195 homologs
Euarchontoglires	~90 Mya	104 species	187 homologs
Primates	~83 Mya	45 species	186 homologs
Haplorrhini	~57 Mya	38 species	168 homologs
Simiiformes	~45 Mya	36 species	162 homologs (dupl. node) 156 homologs (dupl. node) 63 homologs
Catarrhini	~30 Mya	29 species	57 homologs

Advanced Options

-evalue <Real>
 Expectation value (E) threshold for saving hits
 Default = '10'

-word_size <Integer, >=2>
 Word size for wordfinder algorithm
 Default = '3'

-gapopen <Integer>
 Cost to open a gap
 Default = '11'

-gapextend <Integer>
 Cost to extend a gap
 Default = '1'

-matrix <String>
Scoring matrix name (normally BLOSUM62)

-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
 Default = '11'

-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
 Default = '40'

A more recent version of genomicus is available here