Root species for ENSGT00940000157429 (Equus) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 534 species | |
Bilateria | ~580 Mya | 532 species | |
Chordata | ~550 Mya | 528 species | |
Vertebrata | ~550 Mya | 524 species | 634 homologs (oldest homol.) |
Gnathostomata | ~473 Mya | 520 species | 628 homologs |
Euteleostomi | ~420 Mya | 518 species | 626 homologs |
Sarcopterygii | ~400 Mya | 356 species | 406 homologs |
Tetrapoda | ~359 Mya | 354 species | 404 homologs |
Amniota | ~326 Mya | 350 species | 400 homologs |
Mammalia | ~184 Mya | 212 species | 227 homologs |
Theria | ~166 Mya | 210 species | 225 homologs |
Eutheria | ~102 Mya | 200 species | 215 homologs |
Boreoeutheria | ~95 Mya | 190 species | 205 homologs |
Laurasiatheria | ~88 Mya | 81 species | 94 homologs |
Laurasiatheria_a | ~77 Mya | 77 species | 90 homologs |
Laurasiatheria_b | ~77 Mya | 41 species | 49 homologs |
Laurasiatheria_c | ~77 Mya | 9 species | 11 homologs |
Equus | ~7 Mya | 3 species | 5 homologs |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'