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DYOGEN group

web-code version: 2021-08-15
database version: 110.01
Tweets by GenomicusDB

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Here you can choose the oldest ancestor of your phylogenetic range of interest and the view you want to display by clicking on one of the following links.

Root species for Nlgn3 (ENSMOCG00000015847) (Prairie vole) AlignView depth PhyloView depth
Fungi/Metazoa group Fungi/Metazoa group ~1500 Mya 399 species
Bilateria Bilateria ~580 Mya 397 species
Chordata Chordata ~550 Mya 393 species
Vertebrata Vertebrata ~550 Mya 389 species 431 homologs (oldest homol.)
Gnathostomata Gnathostomata ~473 Mya 385 species 428 homologs
Euteleostomi Euteleostomi ~420 Mya 383 species 424 homologs
Sarcopterygii Sarcopterygii ~400 Mya 253 species 262 homologs
Tetrapoda Tetrapoda ~359 Mya 251 species 260 homologs
Amniota Amniota ~326 Mya 247 species 256 homologs
Mammalia Mammalia ~184 Mya 193 species 192 homologs
Theria Theria ~166 Mya 191 species 190 homologs
Eutheria Eutheria ~102 Mya 181 species 180 homologs
Boreoeutheria Boreoeutheria ~95 Mya 171 species 171 homologs
Euarchontoglires Euarchontoglires ~90 Mya 95 species 94 homologs
Euarchontoglires_A Euarchontoglires_A ~90 Mya 47 species 46 homologs
Glires Glires ~81 Mya 45 species 45 homologs
Rodentia Rodentia ~80 Mya 41 species 41 homologs
Rodentia_B Rodentia_B ~80 Mya 25 species 25 homologs
Myomorpha Myomorpha ~51 Mya 23 species 23 homologs
Muroidea Muroidea ~44 Mya 21 species 21 homologs
Muroidea_A Muroidea_A ~44 Mya 19 species 19 homologs
Cricetidae Cricetidae ~20 Mya 7 species 7 homologs
Cricetidae_B Cricetidae_B ~18 Mya 3 species 3 homologs
Prairie vole Prairie vole ~0 Mya 1 species 1 homolog

Advanced Options
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'