Root species for ENSPMEG00000012358 (Shortfin molly) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 279 species | |
Bilateria | ~580 Mya | 277 species | |
Chordata | ~550 Mya | 273 species | |
Vertebrata | ~550 Mya | 269 species | |
Euteleostomi | ~420 Mya | 265 species | |
Neopterygii | ~314 Mya | 95 species | |
Osteoglossocephalai | ~267 Mya | 93 species | 26 homologs (oldest homol.) |
Clupeocephala | ~229 Mya | 89 species | 23 homologs |
Euteleosteomorpha | ~206 Mya | 81 species | 18 homologs |
Acanthomorphata | ~148 Mya | 79 species | 17 homologs |
Percomorphaceae | ~128 Mya | 77 species | 16 homologs |
Percomorphaceae_A | ~128 Mya | 75 species | 14 homologs |
Percomorphaceae_B | ~128 Mya | 73 species | 13 homologs |
NAME_3 | ~128 Mya | 63 species | 12 homologs |
Ovalentaria | ~111 Mya | 49 species | 11 homologs |
Atherinomorphae | ~93 Mya | 27 species | 10 homologs |
Cyprinodontiformes | ~74 Mya | 19 species | 9 homologs |
Cyprinodontoidei | ~57 Mya | 17 species | 8 homologs |
Poeciliinae | ~42 Mya | 13 species | 7 homologs |
Poecilia | ~40 Mya | 7 species | 4 homologs |
NAME_6 | ~40 Mya | 5 species | 2 homologs |
Shortfin molly | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'