Root species for PHACTR4 (ENSOANG00000001179) (Platypus) | AlignView depth | PhyloView depth | |
---|---|---|---|
Fungi/Metazoa group | ~1500 Mya | 490 species | |
Bilateria | ~580 Mya | 488 species | |
Chordata | ~550 Mya | 484 species | |
Vertebrata | ~550 Mya | 480 species | 750 homologs (oldest homol.) |
Gnathostomata | ~473 Mya | 476 species | 747 homologs |
Euteleostomi | ~420 Mya | 474 species | 745 homologs |
Sarcopterygii | ~400 Mya | 320 species | 325 homologs |
Tetrapoda | ~359 Mya | 318 species | 323 homologs |
Amniota | ~326 Mya | 316 species | 321 homologs |
Mammalia | ~184 Mya | 200 species | 201 homologs |
Platypus | ~0 Mya | 1 species | 1 homolog |
-evalue <Real>
Expectation value (E) threshold for saving hits
Default = '10'
-word_size <Integer, >=2>
Word size for wordfinder algorithm
Default = '3'
-gapopen <Integer>
Cost to open a gap
Default = '11'
-gapextend <Integer>
Cost to extend a gap
Default = '1'
-matrix <String>
Scoring matrix name (normally BLOSUM62)
-threshold <Real, >=0>
Minimum word score such that the word is added to the BLAST lookup table
Default = '11'
-window_size <Integer, >=0>
Multiple hits window size, use 0 to specify 1-hit algorithm
Default = '40'